{ "_id": "6a168ebaacfb0bcc41d77d39", "Package": "OptirrigCORE", "Type": "Package", "Title": "Optirrig Core: Simulate and Optimize Irrigation Scenarios", "Version": "0.8.0", "Authors@R": "c(\nperson(\"Florian\", \"Ricquier\", role = c(\"aut\", \"cre\"), email = \"florian.ricquier@inrae.fr\",\ncomment = c(ORCID = \"0000-0002-6595-7984\")),\nperson(\"Kevin Bosirany\", \"Orlando\", role = c(\"aut\"), email = \"kevin.orlando@inrae.fr\",\ncomment = c(ORCID = \"0009-0009-2784-3108\")),\nperson(\"Bruno\", \"Cheviron\", role = c(\"aut\"), email = \"bruno.cheviron@inrae.fr\"),\nperson(\"UMR G-Eau Aqua Department INRAE Montpellier\", \"Team Optimiste\", role = c(\"aut\"))\n)", "Description": "The OptirrigCORE package in R is based on the Optirrig\nmodel. It facilitates the extraction and formatting of\nobservation data used by the model, as well as the integration\nof plant, soil and yield descriptions. It supports various\nanalytical methods, such as Ex-Post and Ex-Ante analyses, with\na view to drawing up an optimised irrigation schedule based on\nthe criteria. The package includes all the calculation tools\nneeded to describe biophysical processes with a generalist\napproach. It can be used as a dependency or complement to\nmodify and reinterpret biophysical descriptions. What's more,\nit automates the modeling process, the description of\nbiophysical processes and the analysis of results and\nperformance, guaranteeing a reproducible approach. It also\nmakes it easy to compile results in automated reports.", "Encoding": "UTF-8", "License": "AGPL (>= 3)", "URL": "https://forge.inrae.fr/OptirrigHIVE/OptirrigCORE,\nhttps://optirrighive.pages-forge.inrae.fr/OptirrigCORE/dev,\nhttps://inrae.r-universe.dev/OptirrigCORE", "LazyData": "true", "Additional_repositories": "https://inrae.r-universe.dev", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "libicu-dev libx11-dev", "Repository": "https://inrae.r-universe.dev", "Date/Publication": "2026-04-27 16:32:51 UTC", "RemoteUrl": "https://forge.inrae.fr/OptirrigHIVE/OptirrigCORE", "RemoteRef": "main", "RemoteSha": "c8543bef872d7842f8d3cb081e6f848bd8b46b26", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-27 06:23:27 UTC", "User": "root" }, "Author": "Florian Ricquier [aut, cre] (ORCID:\n),\nKevin Bosirany Orlando [aut] (ORCID:\n),\nBruno Cheviron [aut],\nUMR G-Eau Aqua Department INRAE Montpellier Team Optimiste [aut]", "Maintainer": "Florian Ricquier ", "MD5sum": "d543b3f07fb7bebde89dbb23f1bb0d3f", "_user": "inrae", "_type": "src", "_file": "OptirrigCORE_0.8.0.tar.gz", "_fileid": "2b234e1f9d929a02e6fd5e904d9f21381e7650125642ed15b4b6fdd07cc85bb1", "_filesize": 2248239, "_sha256": "2b234e1f9d929a02e6fd5e904d9f21381e7650125642ed15b4b6fdd07cc85bb1", "_created": "2026-05-27T06:23:27.000Z", "_published": "2026-05-27T06:27:06.643Z", "_distro": "noble", "_jobs": [ { "job": 78019762210, "time": 171, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7233377059" }, { "job": 78019762223, "time": 154, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7233373085" }, { "job": 78019762159, "time": 80, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7233354348" }, { "job": 78019762154, "time": 98, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7233358750" }, { "job": 78019280244, "time": 232, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7233333533" }, { "job": 78019762176, "time": 125, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7233365445" }, { "job": 78019762277, "time": 119, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7233364173" }, { "job": 78019762241, "time": 111, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7233362961" }, { "job": 78019762220, "time": 117, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7233363716" } ], "_buildurl": "https://github.com/r-universe/inrae/actions/runs/26494464073", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://forge.inrae.fr/OptirrigHIVE/OptirrigCORE", "_commit": { "id": "c8543bef872d7842f8d3cb081e6f848bd8b46b26", "author": "fricquier ", "committer": "fricquier ", "message": "add: Include calibration and validation methodology vignette\n\n- Added a new vignette detailing the calibration and internal validation methodology for OptirrigCORE.\n- Updated the navbar in the pkgdown configuration to include a link to the new vignette.\n", "time": 1777307571 }, "_maintainer": { "name": "Florian Ricquier", "email": "florian.ricquier@inrae.fr", "login": "fricquier", "description": "", "uuid": 176375567, "orcid": "0000-0002-6595-7984" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "ini", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "logger", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "readODS", "role": "Imports" }, { "package": "future", "role": "Imports" }, { "package": "future.apply", "role": "Imports" }, { "package": "OptirrigTOOLS", "role": "Suggests" }, { "package": "OptirrigVIEW", "role": "Suggests" }, { 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Agriculture, Food and Environment" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/OptirrigCORE" }, "_devurl": "https://github.com/inrae/optirrigcore", "_pkgdown": "https://optirrighive.pages-forge.inrae.fr/OptirrigCORE/dev", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/OptirrigCORE.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "add_missing_params", "calc_alpha", "calc_B", "calc_B_root", "calc_Bp", "calc_Bp_root", "calc_case", "calc_Cp", "calc_crac", "calc_d", "calc_d_from_Rgravity", "calc_degred", "calc_dose", "calc_dtheta_RU", "calc_dzroot", "calc_dzrootp", "calc_ES", "calc_ES0", "calc_ET0", "calc_ET0_mulch_effect", "calc_ETM", "calc_ETR", "calc_HI", "calc_IR", "calc_Kc", "calc_Kd", "calc_Kd_from_saxton", "calc_KES", "calc_Ks", "calc_Ks_from_cosby", "calc_Ks_from_ottoni", "calc_Ks_from_saxton", "calc_ks_root", "calc_KTP", "calc_LAI", "calc_LAIp", "calc_LT", "calc_PAR", "calc_quota", "calc_R", "calc_R_from_theta", "calc_Rgravity", "calc_Rgravity_from_R", "calc_Rgravity_from_theta", "calc_RU", "calc_RU_from_theta", "calc_RUmax", "calc_stress", "calc_stress_noci_B", "calc_stress_noci_LAI", "calc_stress_T", "calc_stress_water", "calc_sugar_accumulation", "calc_tau", "calc_taum", "calc_Tcrit", "calc_theta", "calc_theta_fc", "calc_theta_fc_from_texture", "calc_theta_from_R", "calc_theta_r", "calc_theta_r_from_texture", "calc_theta_rel", "calc_theta_sat", "calc_theta_sat_from_texture", "calc_theta_wp", "calc_theta_wp_from_texture", "calc_threshold", "calc_TP", "calc_TP0", "calc_TT", "calc_TT_norm", "calc_TT_rel", "calc_TT_sowing", "calc_Y", "calc_Y_sugar", "calc_zroot", "calc_zrootp", "create_model_inputs", "create_model_inputs_climate", "create_model_inputs_crop", "create_model_inputs_irrigation", "create_model_inputs_run", "create_model_inputs_soil", "get_data_path", "get_iday", "get_model_output_path", "get_vars_data", "init_model", "init_model_climate", "init_model_crop_dev", "init_model_irrigation", "init_model_vars", "inputs_meta", "load_config", "parse_date_time", "read", "run_model", "run_model_crop_dev", "run_model_crop_dev_B", "run_model_crop_dev_B_root", "run_model_crop_dev_LAI", "run_model_crop_dev_stress_water", "run_model_crop_dev_Y", "run_model_crop_dev_Y_sugar", "run_model_crop_dev_zroot", "run_model_finance", "run_model_irrig_strat", "run_model_irrig_strat_dose", "run_model_water_balance", "run_model_water_balance_drainage", "run_model_water_balance_ES", "run_model_water_balance_ETM", "run_model_water_balance_init_states", "run_model_water_balance_others", "run_model_water_balance_routing_water", "run_model_water_balance_TP", "run_model_water_balance_update_R", "save_model_outputs", "select_output_vars" ], "_datasets": [ { "name": "BEET_23526BL_clim", "title": "Climate data for beet trial (23526BL)", "object": "BEET_23526BL_clim", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "P", "T", "etp", "Rg" ], "rows": 285, "table": true, "tojson": true }, { "name": "BEET_23526BL_IRRIBET_irrig", "title": "Irrigation schedule for beet trial (23526BL, IRRIBET)", "object": "BEET_23526BL_IRRIBET_irrig", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "Dose" ], "rows": 285, "table": true, "tojson": true }, { "name": "BEET_23526BL_IRRIBET_LAI", "title": "Observed leaf area index for beet trial (23526BL, IRRIBET)", "object": "BEET_23526BL_IRRIBET_LAI", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "LAI", "deltaLAI" ], "rows": 5, "table": true, "tojson": true }, { "name": "BEET_23526BL_IRRIBET_SUGAR", "title": "Observed sugar yield for beet trial (23526BL, IRRIBET)", "object": "BEET_23526BL_IRRIBET_SUGAR", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "Y_sugar", "deltaY_sugar" ], "rows": 3, "table": true, "tojson": true }, { "name": "MAIZE_21LAVALETTE_B", "title": "Observed biomass for maize trial (2021, Lavalette)", "object": "MAIZE_21LAVALETTE_B", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "B", "deltaB" ], "rows": 1, "table": true, "tojson": true }, { "name": "MAIZE_21LAVALETTE_clim", "title": "Climate data for maize trial (2021, Lavalette)", "object": "MAIZE_21LAVALETTE_clim", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "P", "etp", "Rg", "T" ], "rows": 365, "table": true, "tojson": true }, { "name": "MAIZE_21LAVALETTE_irrig", "title": "Irrigation schedule for maize trial (2021, Lavalette)", "object": "MAIZE_21LAVALETTE_irrig", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "Dose" ], "rows": 12, "table": true, "tojson": true }, { "name": "MAIZE_21LAVALETTE_LAI", "title": "Observed leaf area index for maize trial (2021, Lavalette)", "object": "MAIZE_21LAVALETTE_LAI", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "LAI", "deltaLAI" ], "rows": 12, "table": true, "tojson": true }, { "name": "MAIZE_21LAVALETTE_RES", "title": "Observed water reservoir for maize trial (2021, Lavalette)", "object": "MAIZE_21LAVALETTE_RES", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Date", "RES", "deltaRES" ], "rows": 5, "table": true, "tojson": true } ], "_help": [ { "page": "add_missing_params", "title": "Add Missing Parameters from Reference INI Files", "topics": [ "add_missing_params" ] }, { "page": "calc_alpha", "title": "Calculate temperature response alpha parameter", "topics": [ "calc_alpha", "calc_alpha.data.frame", "calc_alpha.matrix", "calc_alpha.numeric" ] }, { "page": "calc_B", "title": "Calculate Biomass Accumulation (B)", "topics": [ "calc_B", "calc_B.data.frame", "calc_B.matrix", "calc_B.NULL", "calc_B.numeric" ] }, { "page": "calc_B_root", "title": "Calculate biomass root accumulation (B_root)", "topics": [ "calc_B_root", "calc_B_root.data.frame", "calc_B_root.matrix", "calc_B_root.numeric" ] }, { "page": "calc_Bp", "title": "Calculate potential biomass production (Bp)", "topics": [ "calc_Bp", "calc_Bp.matrix", "calc_Bp.model_init" ] }, { "page": "calc_Bp_root", "title": "Calculate potential biomass root accumulation (Bp_root)", "topics": [ "calc_Bp_root", "calc_Bp_root.matrix" ] }, { "page": "calc_case", "title": "Calculate model water balance case", "topics": [ "calc_case", "calc_case.matrix", "calc_case.numeric" ] }, { "page": "calc_Cp", "title": "Calculate canopy partition coefficient (Cp)", "topics": [ "calc_Cp", "calc_Cp.numeric" ] }, { "page": "calc_crac", "title": "Calculate root growth parameter (crac)", "topics": [ "calc_crac", "calc_crac.matrix", "calc_crac.model_output", "calc_crac.numeric" ] }, { "page": "calc_d", "title": "Calculate drainage (d)", "topics": [ "calc_d", "calc_d_from_Rgravity", "calc_d_from_Rgravity.matrix", "calc_d_from_Rgravity.numeric" ] }, { "page": "calc_degred", "title": "Calculate \"degred\" root growth calculation input", "topics": [ "calc_degred", "calc_degred.Date", "calc_degred.matrix", "calc_degred.model_init" ] }, { "page": "calc_dose", "title": "Generic function to calculate irrigation (dose)", "topics": [ "calc_dose", "calc_dose.NULL", "calc_dose.numeric" ] }, { "page": "calc_dtheta_RU", "title": "Calculate relative soil moisture above field capacity (dtheta_RU)", "topics": [ "calc_dtheta_RU", "calc_dtheta_RU.matrix", "calc_dtheta_RU.numeric" ] }, { "page": "calc_dzroot", "title": "Calculate root depth increment (dzroot)", "topics": [ "calc_dzroot", "calc_dzroot.matrix", "calc_dzroot.model_output", "calc_dzroot.numeric" ] }, { "page": "calc_dzrootp", "title": "Calculate the change in root depth (dzrootp)", "topics": [ "calc_dzrootp", "calc_dzrootp.matrix", "calc_dzrootp.numeric" ] }, { "page": "calc_ES", "title": "Calculate soil evaporation (ES)", "topics": [ "calc_ES", "calc_ES.matrix", "calc_ES.numeric" ] }, { "page": "calc_ES0", "title": "Calculate potential soil evaporation (ES0)", "topics": [ "calc_ES0", "calc_ES0.matrix", "calc_ES0.numeric" ] }, { "page": "calc_ET0", "title": "Calculate reference evapotranspiration (ET0)", "topics": [ "calc_ET0", "calc_ET0.matrix", "calc_ET0.numeric" ] }, { "page": "calc_ET0_mulch_effect", "title": "Calculate mulch effect on reference evapotranspiration (ET0)", "topics": [ "calc_ET0_mulch_effect", "calc_ET0_mulch_effect.NULL", "calc_ET0_mulch_effect.numeric" ] }, { "page": "calc_ETM", "title": "Calculate maximum crop evapotranspiration (ETM)", "topics": [ "calc_ETM", "calc_ETM.matrix", "calc_ETM.NULL", "calc_ETM.numeric" ] }, { "page": "calc_ETR", "title": "Calculate actual evapotranspiration (ETR)", "topics": [ "calc_ETR", "calc_ETR.matrix", "calc_ETR.numeric" ] }, { "page": "calc_HI", "title": "Calculate harvest index (HI)", "topics": [ "calc_HI", "calc_HI.matrix", "calc_HI.numeric" ] }, { "page": "calc_IR", "title": "Calculate intercepted radiation fraction (IR)", "topics": [ "calc_IR", "calc_IR.matrix", "calc_IR.NULL", "calc_IR.numeric" ] }, { "page": "calc_Kc", "title": "Calculate crop coefficient (Kc) from leaf area index (LAI)", "topics": [ "calc_Kc", "calc_Kc.matrix", "calc_Kc.numeric" ] }, { "page": "calc_Kd", "title": "Calculate hydraulic conductivity (Kd) using various methods", "topics": [ "calc_Kd", "calc_Kd_from_saxton", "calc_Kd_from_saxton.matrix", "calc_Kd_from_saxton.numeric" ] }, { "page": "calc_KES", "title": "Calculate soil evaporation coefficient (KES)", "topics": [ "calc_KES", "calc_KES.matrix", "calc_KES.numeric" ] }, { "page": "calc_Ks", "title": "Calculate saturated hydraulic conductivity (Ks) from soil texture", "topics": [ "calc_Ks", "calc_Ks_from_cosby", "calc_Ks_from_cosby.numeric", "calc_Ks_from_ottoni", "calc_Ks_from_ottoni.numeric", "calc_Ks_from_saxton", "calc_Ks_from_saxton.numeric" ] }, { "page": "calc_ks_root", "title": "Calculate root growth ks_root parameter", "topics": [ "calc_ks_root", "calc_ks_root.matrix", "calc_ks_root.numeric" ] }, { "page": "calc_KTP", "title": "Calculate transpiration reduction coefficient (KTP)", "topics": [ "calc_KTP", "calc_KTP.matrix", "calc_KTP.numeric" ] }, { "page": "calc_LAI", "title": "Calculate leaf area index (LAI)", "topics": [ "calc_LAI", "calc_LAI.data.frame", "calc_LAI.matrix", "calc_LAI.NULL", "calc_LAI.numeric" ] }, { "page": "calc_LAIp", "title": "Calculate potential leaf area index (LAIp)", "topics": [ "calc_LAIp", "calc_LAIp.data.frame", "calc_LAIp.matrix", "calc_LAIp.model_init", "calc_LAIp.NULL", "calc_LAIp.numeric" ] }, { "page": "calc_LT", "title": "Calculate logistic temperature index (LT)", "topics": [ "calc_LT", "calc_LT.data.frame", "calc_LT.matrix", "calc_LT.numeric" ] }, { "page": "calc_PAR", "title": "Calculate photosynthetically active radiation (PAR)", "topics": [ "calc_PAR", "calc_PAR.data.frame", "calc_PAR.matrix", "calc_PAR.numeric" ] }, { "page": "calc_quota", "title": "Calculate Applied Irrigation Dose with Quota Management", "topics": [ "calc_quota" ] }, { "page": "calc_R", "title": "Calculate soil water reserve (R)", "topics": [ "calc_R", "calc_R.default", "calc_R.model_output", "calc_R_from_theta", "calc_R_from_theta.data.frame", "calc_R_from_theta.matrix", "calc_R_from_theta.numeric" ] }, { "page": "calc_Rgravity", "title": "Calculate gravitational soil water (Rgravity)", "topics": [ "calc_Rgravity", "calc_Rgravity_from_R", "calc_Rgravity_from_theta", "calc_Rgravity_from_theta.matrix", "calc_Rgravity_from_theta.numeric" ] }, { "page": "calc_RU", "title": "Calculate soil available water content (RU)", "topics": [ "calc_RU", "calc_RU_from_theta", "calc_RU_from_theta.data.frame", "calc_RU_from_theta.matrix", "calc_RU_from_theta.numeric" ] }, { "page": "calc_RUmax", "title": "Calculate maximum soil available water content (RUmax)", "topics": [ "calc_RUmax", "calc_RUmax.data.frame", "calc_RUmax.matrix", "calc_RUmax.numeric" ] }, { "page": "calc_stress", "title": "Calculate LAI stress value", "topics": [ "calc_stress", "calc_stress.matrix", "calc_stress.model_output", "calc_stress.numeric" ] }, { "page": "calc_stress_noci_B", "title": "Calculate biomass stress nocivity (stress_noci_B)", "topics": [ "calc_stress_noci_B", "calc_stress_noci_B.data.frame", "calc_stress_noci_B.matrix", "calc_stress_noci_B.numeric" ] }, { "page": "calc_stress_noci_LAI", "title": "Calculate leaf area index stress nocivity", "topics": [ "calc_stress_noci_LAI", "calc_stress_noci_LAI.matrix", "calc_stress_noci_LAI.numeric" ] }, { "page": "calc_stress_T", "title": "Calculate temperature stress value", "topics": [ "calc_stress_T", "calc_stress_T.matrix", "calc_stress_T.model_output", "calc_stress_T.numeric" ] }, { "page": "calc_stress_water", "title": "Calculate the stress water ratio", "topics": [ "calc_stress_water", "calc_stress_water.matrix", "calc_stress_water.model_output", "calc_stress_water.numeric" ] }, { "page": "calc_sugar_accumulation", "title": "Calculate sugar accumulation in roots", "topics": [ "calc_sugar_accumulation", "calc_sugar_accumulation.matrix" ] }, { "page": "calc_tau", "title": "Calculate the tau parameter", "topics": [ "calc_tau", "calc_tau.matrix", "calc_tau.numeric" ] }, { "page": "calc_taum", "title": "Calculate root growth taum parameter", "topics": [ "calc_taum", "calc_taum.matrix", "calc_taum.model_output", "calc_taum.numeric" ] }, { "page": "calc_Tcrit", "title": "Calculate Critical Temperature (Tcrit)", "topics": [ "calc_Tcrit", "calc_Tcrit.matrix", "calc_Tcrit.numeric" ] }, { "page": "calc_theta", "title": "Calculate soil water content", "topics": [ "calc_theta", "calc_theta_from_R", "calc_theta_from_R.matrix", "calc_theta_from_R.numeric" ] }, { "page": "calc_theta_fc", "title": "Calculate available water capacity at field capacity", "topics": [ "calc_theta_fc", "calc_theta_fc_from_texture", "calc_theta_fc_from_texture.numeric" ] }, { "page": "calc_theta_r", "title": "Calculate Residual Soil Water Content (Theta_r)", "topics": [ "calc_theta_r", "calc_theta_r_from_texture", "calc_theta_r_from_texture.numeric" ] }, { "page": "calc_theta_rel", "title": "Calculate Relative Soil Water Content (Theta_rel)", "topics": [ "calc_theta_rel", "calc_theta_rel.matrix", "calc_theta_rel.numeric" ] }, { "page": "calc_theta_sat", "title": "Calculate Saturated Water Content (Theta_sat)", "topics": [ "calc_theta_sat", "calc_theta_sat_from_texture", "calc_theta_sat_from_texture.numeric" ] }, { "page": "calc_theta_wp", "title": "Calculate available water capacity at wilting point", "topics": [ "calc_theta_wp", "calc_theta_wp_from_texture", "calc_theta_wp_from_texture.numeric" ] }, { "page": "calc_threshold", "title": "Calculate Irrigation Trigger Conditions", "topics": [ "calc_threshold" ] }, { "page": "calc_TP", "title": "Calculate crop transpiration", "topics": [ "calc_TP", "calc_TP.model_output", "calc_TP.numeric" ] }, { "page": "calc_TP0", "title": "Calculate potential transpiration (TP0)", "topics": [ "calc_TP0", "calc_TP0.matrix", "calc_TP0.numeric" ] }, { "page": "calc_TT", "title": "Calculate Cumulative Thermal Time (TT)", "topics": [ "calc_TT", "calc_TT.data.frame", "calc_TT.matrix", "calc_TT.model_init", "calc_TT.numeric" ] }, { "page": "calc_TT_norm", "title": "Calculate normalized thermal time", "topics": [ "calc_TT_norm", "calc_TT_norm.data.frame", "calc_TT_norm.default", "calc_TT_norm.matrix" ] }, { "page": "calc_TT_rel", "title": "Calculate Relative Thermal Time (TT_rel)", "topics": [ "calc_TT_rel", "calc_TT_rel.data.frame", "calc_TT_rel.matrix", "calc_TT_rel.numeric" ] }, { "page": "calc_TT_sowing", "title": "Calculate relative thermal time since sowing", "topics": [ "calc_TT_sowing", "calc_TT_sowing.data.frame", "calc_TT_sowing.matrix", "calc_TT_sowing.numeric" ] }, { "page": "calc_Y", "title": "Calculate yield", "topics": [ "calc_Y", "calc_Y.matrix", "calc_Y.NULL", "calc_Y.numeric" ] }, { "page": "calc_Y_sugar", "title": "Calculate sugar yield (Y_sugar)", "topics": [ "calc_Y_sugar", "calc_Y_sugar.matrix", "calc_Y_sugar.numeric" ] }, { "page": "calc_zroot", "title": "Calculate root depth", "topics": [ "calc_zroot", "calc_zroot.matrix", "calc_zroot.numeric" ] }, { "page": "calc_zrootp", "title": "Calculate potential root depth", "topics": [ "calc_zrootp", "calc_zrootp.matrix", "calc_zrootp.model_init", "calc_zrootp.numeric" ] }, { "page": "create_model_inputs", "title": "Create Model Inputs (docs from createInputsModel)", "topics": [ "create_model_inputs", "create_model_inputs.character", "create_model_inputs.data.frame", "create_model_inputs.list" ] }, { "page": "create_model_inputs_climate", "title": "Create climate model inputs", "topics": [ "create_model_inputs_climate", "create_model_inputs_climate.character", "create_model_inputs_climate.data.frame", "create_model_inputs_climate.list" ] }, { "page": "create_model_inputs_crop", "title": "Create crop model inputs", "topics": [ "create_model_inputs_crop", "create_model_inputs_crop.list" ] }, { "page": "create_model_inputs_irrigation", "title": "Create Irrigation Model Inputs", "topics": [ "create_model_inputs_irrigation", "create_model_inputs_irrigation.character", "create_model_inputs_irrigation.data.frame", "create_model_inputs_irrigation.list" ] }, { "page": "create_model_inputs_run", "title": "Create run model inputs", "topics": [ "create_model_inputs_run", "create_model_inputs_run.list" ] }, { "page": "create_model_inputs_soil", "title": "Create soil model inputs", "topics": [ "create_model_inputs_soil", "create_model_inputs_soil.list" ] }, { "page": "get_data_path", "title": "Give the complete path of the data and cache data on local disk", "topics": [ "get_data_path" ] }, { "page": "get_iday", "title": "Get model time indices", "topics": [ "get_iday", "get_iday.matrix", "get_iday.model_init" ] }, { "page": "get_model_output_path", "title": "Generate Output File Path for Model Results", "topics": [ "get_model_output_path" ] }, { "page": "get_vars_data", "title": "Retrieve Metadata for Parameters and Variables", "topics": [ "get_vars_data" ] }, { "page": "init_model", "title": "Initialize the model simulation", "topics": [ "init_model", "init_model.matrix", "init_model.model_input", "init_model.model_inputs" ] }, { "page": "init_model_climate", "title": "Initialize the model simulation - climate", "topics": [ "init_model_climate", "init_model_climate.data.frame", "init_model_climate.list", "init_model_climate.matrix", "init_model_climate.model_input" ] }, { "page": "init_model_crop_dev", "title": "Initialize the model simulation - crop development", "topics": [ "init_model_crop_dev", "init_model_crop_dev.model_init" ] }, { "page": "init_model_irrigation", "title": "Initialize the model simulation - climate", "topics": [ "init_model_irrigation", "init_model_irrigation.matrix", "init_model_irrigation.model_input" ] }, { "page": "init_model_vars", "title": "Initialize variables for the model simulation", "topics": [ "init_model_vars", "init_model_vars.matrix", "init_model_vars.model_init" ] }, { "page": "inputs_meta", "title": "Retrieve inputs metadata (categories, types, subcategories)", "topics": [ "inputs_meta" ] }, { "page": "load_config", "title": "Load Package Configuration File", "topics": [ "load_config" ] }, { "page": "MAIZE_21LAVALETTE_B", "title": "Observed biomass for maize trial (2021, Lavalette)", "topics": [ "MAIZE_21LAVALETTE_B" ] }, { "page": "MAIZE_21LAVALETTE_clim", "title": "Climate data for maize trial (2021, Lavalette)", "topics": [ "MAIZE_21LAVALETTE_clim" ] }, { "page": "MAIZE_21LAVALETTE_irrig", "title": "Irrigation schedule for maize trial (2021, Lavalette)", "topics": [ "MAIZE_21LAVALETTE_irrig" ] }, { "page": "MAIZE_21LAVALETTE_LAI", "title": "Observed leaf area index for maize trial (2021, Lavalette)", "topics": [ "MAIZE_21LAVALETTE_LAI" ] }, { "page": "MAIZE_21LAVALETTE_RES", "title": "Observed water reservoir for maize trial (2021, Lavalette)", "topics": [ "MAIZE_21LAVALETTE_RES" ] }, { "page": "utils-parse_date_time", "title": "Parse date strings into Date objects", "topics": [ "parse_date_time" ] }, { "page": "utils-read", "title": "Read a file by inferring the reader from the file extension", "topics": [ "read" ] }, { "page": "run_model", "title": "Run Optirrig model", "topics": [ "run_model", "run_model.character", "run_model.data.frame", "run_model.list", "run_model.model_init", "run_model.model_inits", "run_model.model_input", "run_model.model_inputs", "run_model.NULL" ] }, { "page": "run_model_crop_dev", "title": "Crop development module", "topics": [ "run_model_crop_dev", "run_model_crop_dev.model_output" ] }, { "page": "run_model_crop_dev_B", "title": "Biomass part of model crop development module", "topics": [ "run_model_crop_dev_B", "run_model_crop_dev_B.matrix", "run_model_crop_dev_B.model_output" ] }, { "page": "run_model_crop_dev_B_root", "title": "Run/update crop root biomass (B_root) for a single day", "topics": [ "run_model_crop_dev_B_root", "run_model_crop_dev_B_root.matrix", "run_model_crop_dev_B_root.model_output" ] }, { "page": "run_model_crop_dev_LAI", "title": "LAI part of the crop development module", "topics": [ "run_model_crop_dev_LAI", "run_model_crop_dev_LAI.matrix", "run_model_crop_dev_LAI.model_output" ] }, { "page": "run_model_crop_dev_stress_water", "title": "Water stress part of the crop development module", "topics": [ "run_model_crop_dev_stress_water", "run_model_crop_dev_stress_water.matrix" ] }, { "page": "run_model_crop_dev_Y", "title": "Yield part of the crop development module", "topics": [ "run_model_crop_dev_Y", "run_model_crop_dev_Y.matrix", "run_model_crop_dev_Y.model_output" ] }, { "page": "run_model_crop_dev_Y_sugar", "title": "Run model for crop development stage Y (sugar)", "topics": [ "run_model_crop_dev_Y_sugar", "run_model_crop_dev_Y_sugar.matrix", "run_model_crop_dev_Y_sugar.model_output" ] }, { "page": "run_model_crop_dev_zroot", "title": "Root development part of the crop development module", "topics": [ "run_model_crop_dev_zroot", "run_model_crop_dev_zroot.matrix", "run_model_crop_dev_zroot.model_output" ] }, { "page": "run_model_finance", "title": "Run Financial Model", "topics": [ "run_model_finance", "run_model_finance.model" ] }, { "page": "run_model_irrig_strat", "title": "Run Model for Irrigation Strategy", "topics": [ "run_model_irrig_strat", "run_model_irrig_strat.model_output" ] }, { "page": "run_model_irrig_strat_dose", "title": "Run Irrigation Strategy Dose Model", "topics": [ "run_model_irrig_strat_dose", "run_model_irrig_strat_dose.matrix", "run_model_irrig_strat_dose.model_output" ] }, { "page": "run_model_water_balance", "title": "Water balance module", "topics": [ "run_model_water_balance", "run_model_water_balance.model_output", "run_model_water_balance_others.matrix", "run_model_water_balance_others.model_output" ] }, { "page": "run_model_water_balance_drainage", "title": "Drainage part of the water balance module", "topics": [ "run_model_water_balance_drainage", "run_model_water_balance_drainage.matrix", "run_model_water_balance_drainage.model_output" ] }, { "page": "run_model_water_balance_ES", "title": "Evaporation part of the water balance module", "topics": [ "run_model_water_balance_ES", "run_model_water_balance_ES.matrix", "run_model_water_balance_ES.model_output" ] }, { "page": "run_model_water_balance_ETM", "title": "Potential evapotranspiration (ETM) part of the water balance module", "topics": [ "run_model_water_balance_ETM", "run_model_water_balance_ETM.matrix", "run_model_water_balance_ETM.model_output" ] }, { "page": "run_model_water_balance_init_states", "title": "Initialize soil hydric states for the water balance module", "topics": [ "run_model_water_balance_init_states", "run_model_water_balance_init_states.matrix", "run_model_water_balance_init_states.model_output" ] }, { "page": "run_model_water_balance_others", "title": "Others part of the water balance module", "topics": [ "run_model_water_balance_others" ] }, { "page": "run_model_water_balance_routing_water", "title": "Route water through the soil layers", "topics": [ "run_model_water_balance_routing_water", "run_model_water_balance_routing_water.matrix", "run_model_water_balance_routing_water.model_output" ] }, { "page": "run_model_water_balance_TP", "title": "Transpiration part of the water balance module", "topics": [ "run_model_water_balance_TP", "run_model_water_balance_TP.matrix", "run_model_water_balance_TP.model_output" ] }, { "page": "run_model_water_balance_update_R", "title": "Update soil hydric states for the water balance module", "topics": [ "run_model_water_balance_update_R", "run_model_water_balance_update_R.matrix", "run_model_water_balance_update_R.model_output" ] }, { "page": "save_model_outputs", "title": "Save Model Outputs", "topics": [ "save_model_outputs", "save_model_outputs.data.frame", "save_model_outputs.matrix", "save_model_outputs.model_output", "save_model_outputs.model_outputs" ] }, { "page": "select_output_vars", "title": "Select variables to return from model outputs", "topics": [ "select_output_vars", "select_output_vars.matrix" ] } ], "_pkglogo": "https://forge.inrae.fr/OptirrigHIVE/OptirrigCORE/raw/main/man/figures/logo.png", "_readme": "https://forge.inrae.fr/OptirrigHIVE/OptirrigCORE/raw/main/README.md", "_rundeps": [ "bit", "bit64", "cellranger", "cli", "clipr", "codetools", "cpp11", "crayon", "digest", "dplyr", "future", "future.apply", "generics", "globals", "glue", "hms", "ini", "lifecycle", "listenv", "logger", "lubridate", "magrittr", "minty", "parallelly", "pillar", "pkgconfig", "prettyunits", "progress", "R6", "readODS", "readr", "readxl", "rematch", "rlang", "stringi", "tibble", "tidyselect", "timechange", "tzdb", "utf8", 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