{ "_id": "6a4e6c3221b18e15484fe379", "Package": "easy16S", "Title": "a user-friendly Shiny web-service for exploration and\nvisualization of microbiome", "Version": "26.07", "Authors@R": "c(\nperson(\"Cédric\", \"Midoux\", , \"cedric.midoux@inrae.fr\", role = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0002-7964-0929\")),\nperson(\"Mahendra\", \"Mariadassou\", , \"mahendra.mariadassou@inrae.fr\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-2986-354X\"))\n)", "Description": "This shiny application provides users with an interactive\nand easy-to-use microbiome analysis framework.", "License": "AGPL (>= 3)", "URL": "https://easy16s.migale.inrae.fr,", "doi": "10.21105/joss.06704", "BugReports": "https://forge.inrae.fr/migale/easy16s/-/issues", "VignetteBuilder": "knitr", "Remotes": [ "mahendra-mariadassou/phyloseq-extended@dev" ], "biocViews": "Microbiome", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", "Config/roxygen2/version": "8.0.0", "Repository": "https://inrae.r-universe.dev", "Date/Publication": "2026-07-07 15:46:35 UTC", "RemoteUrl": "https://forge.inrae.fr/migale/easy16s", "RemoteRef": "HEAD", "RemoteSha": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-08 15:18:17 UTC", "User": "root" }, "Author": "Cédric Midoux [cre, aut] (ORCID:\n),\nMahendra Mariadassou [ctb] (ORCID:\n)", "Maintainer": "Cédric Midoux ", "_user": "inrae", "_type": "src", "_file": "easy16S_26.07.tar.gz", "_fileid": "https://r2.ropensci.org/7c702bf141684c62f6c600fccf19f4a971d12f4c68ccff1f35807673a6c2ee24", "_filesize": 192998, "_sha256": "7c702bf141684c62f6c600fccf19f4a971d12f4c68ccff1f35807673a6c2ee24", "_expires": "2026-10-16T15:26:40.000Z", "_created": "2026-07-08T15:18:17.000Z", "_published": "2026-07-08T15:26:42.782Z", "_jobs": [ { "job": 85908107760, "time": 384, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8173230853" }, { "job": 85908107718, "time": 370, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8173223855" }, { "job": 85908107828, "time": 347, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8173252201" }, { "job": 85908107717, "time": 300, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8173200403" }, { "job": 85906261339, "time": 449, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8173034698" }, { "job": 85908107705, "time": 246, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8173161142" }, { "job": 85908107791, "time": 340, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "8173213427" }, { "job": 85908107805, "time": 423, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "8173250690" }, { "job": 85908107825, "time": 314, "config": "windows-release", "r": "4.6.1", "check": "WARNING", "artifact": "8173197960" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815", "_status": "success", "_upstream": "https://forge.inrae.fr/migale/easy16s", "_commit": { "id": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "author": "Cédric Midoux ", "committer": "Cédric Midoux ", "message": "golem update\n", "time": 1783439195 }, "_maintainer": { "name": "Cédric Midoux", "email": "cedric.midoux@inrae.fr", "login": "cedricmidoux", "orcid": "0000-0002-7964-0929", "description": "", "uuid": 34483895 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "Biostrings", "role": "Imports" }, { "package": "broom", "role": "Imports" }, { "package": "bsplus", "role": "Imports" }, { "package": "config", "version": ">= 0.3.1", "role": "Imports" }, { "package": "DESeq2", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "esquisse", "role": "Imports" }, { "package": "forcats", "role": "Imports" }, { "package": "ggfortify", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "golem", "version": ">= 0.4.1", "role": "Imports" }, { "package": "htmltools", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "phyloseq", "role": "Imports" }, { "package": "phyloseq.extended", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "rstatix", "role": "Imports" }, { "package": "shiny", "version": ">= 1.7.4", "role": "Imports" }, { "package": "shinycssloaders", "role": "Imports" }, { "package": "shinydashboard", "role": "Imports" }, { "package": "shinyWidgets", "role": "Imports" }, { "package": "spsComps", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "vegan", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "forge-migale", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 2 }, { "week": "2026-09", "n": 2 }, { "week": "2026-26", "n": 1 }, { "week": "2026-28", "n": 1 } ], "_tags": [ { "name": "v25.07", "date": "2025-07-24" }, { "name": "v26.02", "date": "2026-02-27" }, { "name": "v26.06", "date": "2026-06-24" }, { "name": "v26.07", "date": "2026-07-07" } ], "_topics": [ "microbiome" ], "_userbio": { "uuid": 64418390, "type": "organization", "name": "INRAE", "followers": 61, "description": "INRAE, French National Institute for Agriculture, Food and Environment" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/easy16S" }, "_pkgdown": "https://easy16s.migale.inrae.fr", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/easy16S.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "run_app" ], "_help": [ { "page": "run_app", "title": "Run the Shiny Application", "topics": [ "run_app" ] } ], "_pkglogo": "https://forge.inrae.fr/migale/easy16s/raw/HEAD/man/figures/logo.png", "_readme": "https://forge.inrae.fr/migale/easy16s/raw/HEAD/README.md", "_rundeps": [ "abind", "ade4", "ape", "askpass", "assertthat", "attempt", "backports", "base64enc", "BH", "Biobase", "BiocGenerics", "BiocParallel", "biomformat", "Biostrings", "bit", "bit64", "boot", "brio", "broom", "bslib", "bsplus", "cachem", "car", "carData", "cellranger", "class", "classInt", "cli", "clipr", "cluster", "codetools", "colorspace", "commonmark", "config", "corrplot", "cowplot", "cpp11", "crayon", "crosstalk", "curl", "data.table", "datamods", "DelayedArray", "Deriv", "desc", "DESeq2", "digest", "doBy", "downlit", "dplyr", "DT", "e1071", "esquisse", "evaluate", "fansi", "farver", "fastmap", "fontawesome", "forcats", "foreach", "forecast", "foreign", "formatR", "Formula", "fracdiff", "fs", "futile.logger", "futile.options", "generics", "GenomicRanges", "ggfortify", "ggplot2", "glue", "golem", "gridExtra", "gtable", "haven", "highr", "hms", "htmltools", "htmlwidgets", "httpuv", "httr", "igraph", "IRanges", "isoband", "iterators", "jquerylib", "jsonlite", "KernSmooth", "knitr", "labeling", "lambda.r", "later", "lattice", "lazyeval", "lifecycle", "lme4", "lmtest", "locfit", "lubridate", "magrittr", "MASS", "Matrix", "MatrixGenerics", "MatrixModels", "matrixStats", "memoise", "mgcv", "mime", "minqa", "modelr", "multtest", "nlme", "nloptr", "nnet", "numDeriv", "openssl", "otel", "pbkrtest", "permute", "phosphoricons", "phyloseq", "phyloseq.extended", "pillar", "pixmap", "pkgconfig", "plotly", "plyr", "prettyunits", "progress", "promises", "proxy", "purrr", "quantreg", "R.methodsS3", "R.oo", "R.utils", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reactable", "reactR", "readr", "readxl", "reformulas", "rematch", "reshape2", "rio", "rlang", "rmarkdown", "rstatix", "rstudioapi", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "shiny", "shinyAce", "shinybusy", "shinycssloaders", "shinydashboard", "shinytoastr", "shinyWidgets", "snow", "sourcetools", "sp", "SparseArray", "SparseM", "spsComps", "stringi", "stringr", "SummarizedExperiment", "survival", "sys", "tibble", "tidyr", "tidyselect", "timechange", "timeDate", "tinytex", "toastui", "tzdb", "urca", "utf8", "vctrs", "vegan", "viridisLite", "vroom", "withr", "writexl", "xfun", "xtable", "XVector", "yaml", "zip", "zoo" ], "_vignettes": [ { "source": "easy16S.Rmd", "filename": "easy16S.html", "title": "easy16S", "engine": "knitr::rmarkdown", "headings": [ "Usage", "Load data", "Preprocess data", "A few words about rarefaction", "Explore and Analyse Data", "Tables", "Metadata", "Barplot", "Rarefaction", "Heatmap", "$\\alpha$-Diversity", "Table", "Plot", "ANOVA", "$\\beta$-diversity", "Samples heatmap", "Samples clustering", "MultiDimensional Scaling", "Multivariate ANOVA", "PCA", "Differential abundance", "Export data, plot, and results" ], "created": "2024-02-20 14:19:24", "modified": "2024-07-09 09:29:31", "commits": 3 } ], "_score": 3.3010299956639813, "_indexed": false, "_nocasepkg": "easy16s", "_universes": [ "inrae" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "26.07", "date": "2026-07-08T15:22:35.000Z", "distro": "resolute", "commit": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "fileid": "https://r2.ropensci.org/065e2b72034f668b49677c4859f73780244f2a6d04287098e7f0b4b3e7859c51", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815" }, { "r": "4.6.1", "os": "linux", "version": "26.07", "date": "2026-07-08T15:22:33.000Z", "distro": "resolute", "commit": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "fileid": "https://r2.ropensci.org/aae8050ac1582576fd3394cf7d7a144e8dd31e6074a68b0c93a92ffe42026cb5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815" }, { "r": "4.5.3", "os": "mac", "version": "26.07", "date": "2026-07-08T15:23:26.000Z", "commit": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "fileid": "https://r2.ropensci.org/95c7de67a1438133f8b5784f95da7140e479d5bdbcea971e7b51f90e63bbc3e7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815" }, { "r": "4.6.1", "os": "mac", "version": "26.07", "date": "2026-07-08T15:21:43.000Z", "commit": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "fileid": "https://r2.ropensci.org/41c6949936a5bc220b4650d66789a7171509b4cae8db669601d94469daf62e3e", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815" }, { "r": "4.6.0", "os": "wasm", "version": "26.07", "date": "2026-07-08T15:23:03.000Z", "commit": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "fileid": "https://r2.ropensci.org/b3664c518edece0ebe0c0a93253da1d511f6fdbfd9feb8bd81b7985f0ee93b3e", "status": "success", "buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815" }, { "r": "4.7.0", "os": "win", "version": "26.07", "date": "2026-07-08T15:21:48.000Z", "commit": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "fileid": "https://r2.ropensci.org/2174e37161ecb2f4d703e080746a51f1d0a4b971e17e6f450069c21ac9badfbc", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815" }, { "r": "4.5.3", "os": "win", "version": "26.07", "date": "2026-07-08T15:23:18.000Z", "commit": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "fileid": "https://r2.ropensci.org/b3c084b7b03202d985199b8777cbbd5702c82603378554de991af388f810b176", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815" }, { "r": "4.6.1", "os": "win", "version": "26.07", "date": "2026-07-08T15:21:17.000Z", "commit": "775ecf91bdc99719c3b259c15f992de1e72b55d4", "fileid": "https://r2.ropensci.org/1ae9992924332125169181c0d0c2cea78aa7d5168a39ec99ed61ee62028dfd77", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/inrae/actions/runs/28953491815" } ] }