Package 'easy16S'

Title: a user-friendly Shiny web-service for exploration and visualization of microbiome
Description: This shiny application provides users with an interactive and easy-to-use microbiome analysis framework.
Authors: Cédric Midoux [cre, aut] (ORCID: <https://orcid.org/0000-0002-7964-0929>), Mahendra Mariadassou [ctb] (ORCID: <https://orcid.org/0000-0003-2986-354X>)
Maintainer: Cédric Midoux <[email protected]>
License: AGPL (>= 3)
Version: 26.07
Built: 2026-07-08 15:18:18 UTC
Source: https://forge.inrae.fr/migale/easy16s

Help Index

Run the Shiny Application

Description

Run the Shiny Application

Usage

run_app(
  physeq = NULL,
  onStart = NULL,
  options = list(),
  enableBookmarking = NULL,
  uiPattern = "/",
  ...
)

Arguments

physeq

A phyloseq object to load in the app.
onStart

A function that will be called before the app is actually run. This is only needed for shinyAppObj, since in the shinyAppDir case, a global.R file can be used for this purpose.
options

Named options that should be passed to the runApp call (these can be any of the following: "port", "launch.browser", "host", "quiet", "display.mode" and "test.mode"). You can also specify width and height parameters which provide a hint to the embedding environment about the ideal height/width for the app.
enableBookmarking

Can be one of "url", "server", or "disable". The default value, NULL, will respect the setting from any previous calls to enableBookmarking(). See enableBookmarking() for more information on bookmarking your app.
uiPattern

A regular expression that will be applied to each GET request to determine whether the ui should be used to handle the request. Note that the entire request path must match the regular expression in order for the match to be considered successful.
...

arguments to pass to golem_opts. See '?golem::get_golem_options' for more details.